Tide Bites: A Unique Challenge: Marine Subtidal Ecology at UW Friday Harbor Labs

“Tide Bites” is the monthly newsletter of UW Friday Harbor Laboratories. This month, two of the instructors of the Marine Subtidal Ecology course Dive Officer Pema Kitaeff and Dr. Alex Lowe write about what it takes to be a scientific diver at the University of Washington. This course is currently scheduled to be offered in the summer of even years (the next offering will be summer 2020) at Friday Harbor Labs, and interested students are encouraged to contact the Marine Biology Adviser for more information.

“This set up quite a challenge: train 12 students to accurately count and identify dozens of algae, invertebrate, and fish species in two weeks while simultaneously training in dive rescue techniques and scientific subtidal survey methods, developing an independent research project and figuring out how to write legibly on datasheets underwater while wearing ¼”-thick gloves.”

Despite windy weather and choppy water just the day before, the morning of Friday June 22nd 2018 dawned gloriously sunny and calm: a gift of optimal conditions bestowed on the patient planners of field work. Few have been as deserving of such a gift as the 12 students in the Marine Subtidal Ecology (MSE) course offered during Session A this past summer FHL. June 22nd was only their 13th day in the San Juan Islands but it marked the culmination of the Kelp Ecosystem Ecology Network (KEEN) data collection, for which they had been preparing before they even arrived.

This year’s MSE was the first time a scientific diving course was administered to a full roster of students within an academic course at FHL. Led by Dr. Aaron Galloway (U. of Oregon), soon-to-be-Dr. Alex Lowe (UW), and Dive Officer Pema Kitaeff (FHL), the course is built around the American Academy of Underwater Sciences (AAUS) standards and ultimately qualifies students as full scientific divers. Since 2010, scientific diver training has been offered at FHL as a non-credit workshop. Our goal for MSE was to train students in scientific diving methods and provide real research experiences in the Salish Sea for academic credit – a change we hoped would broaden access to scientific diving and underwater science. Divers prep on a boatPrevious iterations of this concept had incorporated scientific diving into the 2009 Marine Biology Quarter, and Ecology Between and Below Pacific Tides course in 2015. This year we invited students for a 5-week intensive scientific diving and marine ecology course. Like all FHL summer courses, the application process was competitive and the cohort of 12 MSE students all shared a strong desire and determination to become scientific divers. Their backgrounds and experience were diverse: a few already had logbooks confirming over a hundred dives, while others had worked hard to log the minimum 20 dives required at the start of the class. A few had been to FHL before and had experience recognizing local marine flora and fauna, but many had no prior familiarity with Salish Sea organisms. This set up quite a challenge: train 12 students to accurately count and identify dozens of algae, invertebrate, and fish species in two weeks while simultaneously training in dive rescue techniques and scientific subtidal survey methods, developing an independent research project and figuring out how to write legibly on datasheets underwater while wearing ¼”-thick gloves.

The Kelp Ecosystem Ecology Network uses a standardized method to compare studies of kelp ecosystems around the world. Kelp forests cover 25% of the world’s coastline, dominating many nearshore habitats in temperate climates. They are important sources of food and structure that support valuable nearshore ecosystems. We built the course around the KEEN protocol because it implements commonly used survey techniques, connects to international collaborators, and requires expert knowledge of local flora and fauna. In other words, it could be an ideal teaching tool. Incorporating this work into a summer course contributes to a better understanding of how the habitat around FHL fits into the global context of kelp forests, but also serves as a roadmap for other field stations hoping to incorporate networked research into scientific diving classes. We were able to build on research conducted by Dr. Katie Dobkowski and others who have studied kelp in the San Juan Islands. For the purposes of MSE 2018, we established our KEEN site at a Nereocystis (bull kelp) bed known to FHL researchers just off the Southwest tip of Shaw Island.

The students dove right into their training, taking advantage of the diversity of habitats accessible from the FHL dock. Challenge accepted! We walked through survey methods on the lawn in front of the dining hall, and practiced counting and identifying local organisms at low tide below the yoga platform between labs 5 and 11. Then, by the end of the first week the divers-in-training were ready to get underwater with slates, quadrats, and transect tapes to further develop research skills in the eelgrass and clump-weight reef habitats under and around the docks. We used the species-rich rocky reefs in the FHL preserve to teach organism identification and life history. Finally, we took these skills to the kelp bed at the South Shaw Island KEEN site for two practice dives before the big day when the students conducted the final survey to characterize the biological community before we removed the kelp from the experimental treatment plots. Mission accomplished: what seemed impossible had become reality.

read the full article


UW News: Threatened tropical coral reefs form complex, ancient associations with bacteria, researchers say

The following is an excerpt from an article published by UW News: Urton, James (2018, November 27). Threatened tropical coral reefs form complex, ancient associations with bacteria, researchers say. Retrieved from http://www.washington.edu/news/2018/11/27/coral-microbiome-study/

Ryan McMinds
A 2014 scene from Trawler Reef in the northern part of the Great Barrier Reef.

When it comes to the well-being of coral reefs, for many years scientists focused on bleaching, an event that can endanger corals and the diverse marine ecosystems that they support. In bleaching, high temperatures or other stressors cause corals to expel Symbiodinium, the beneficial, brightly colored microbes that would normally share excess energy and nutrients with corals. Bleaching ultimately starves corals and endangers the entire reef ecosystem.

But over the last two decades, scientists have realized that other microbes are also critical for coral health, including communities of bacteria that live on coral surfaces and in their tissues. These bacteria constitute the coral microbiome. High temperatures — even below the threshold for bleaching — can disrupt coral microbiomes, leaving corals vulnerable to disease.

But scientists lack comprehensive data about the bacteria that make up the microbiomes of the more than 1,500 coral species worldwide. That is starting to change thanks to the Global Coral Microbiome Project, a collaboration among researchers at the University of Washington Bothell, Pennsylvania State University and Oregon State University. The team is studying the diversity of bacteria within corals and how it has changed over time.

In their first comprehensive survey of healthy corals, published Nov. 22 in the journal Nature Communications, the team reports that coral bacteria are a surprisingly diverse bunch — and that different sections of the coral body can host unique communities of bacteria.

“This project represents one of the most comprehensive efforts to identify what kinds of bacteria are present in diverse groups of tropical corals, how the types of bacteria can differ over coral anatomy, and how the symbiotic relationships between corals and bacteria have changed over coral evolution,” said senior and corresponding author Jesse Zaneveld, an assistant professor of biological sciences at UW Bothell.

read the full article on UW News


FISH 427: Tropical Marine Biology

note: FISH 427 has been pre-approved as an ‘Organismal Processes’ elective for the Marine Biology Major, and can count towards the ‘Aquatic and Fishery Sciences Elective’ requirement for the Marine Biology Minor.
FISH 427A Tropical Marine Biology (5cr, NW) – MWF 1:30-2:20, W 9:30-12:20
By examining the biogeography, evolution, and ecology of coral reefs, mangroves, and sea grass beds, provides an integrated overview of tropical-systems biology. Integrates ecological and physiological concepts in order to show how anthropogenic stressors such as increased temperature, pollution, and ocean acidification can impact the resilience of tropical marine ecosystems.
Pre-reqs: FISH/OCEAN 270 or BIOL 220; FISH 290 or FHL333 or MARBIO305; STAT 311 or QSCI 381
Instructor: Jackie Padilla-Gamino (jpgamino@uw.edu)

Education and Volunteer Program Coordinator, Highline College MaST Center (Des Moines, WA)

Hi All,

Please help spread the word.  Highline College’s MaST Center, located halfway between Seattle and Tacoma, is hiring a full-time, with benefits, Education and Volunteer Program Coordinator.  Applications are due 12/7 and the position is expected to start in January 2018.  The position is currently funded through December 2020.

See the website for the posting…https://www.governmentjobs.com/careers/highline/jobs/2260322/program-coordinator-education-and-volunteer-program-mast-center?category[0]=Laboratory&sort=PositionTitle%7CAscending&pagetype=jobOpportunitiesJobs

We are very excited as this is the first time that the MaST Center is hiring a non-faculty, full-time, living wage, with benefits job.  Besides running our volunteer programs that currently consist of over 150 volunteers, this person will lead our educational programs and be developing educational pieces centered around the $500,000 man-made reef that the MaST Center is working with Washington SCUBA Alliance to create just off the end of our facility.

Come join our team or help spread the word.

Thanks,

Rus Higley
(he/his/him)
Director/Faculty
Marine Science & Technology (MaST) Center, Highline College
206.715.0576
Office located at the MaST, rm 109
P.O. Box 98000, MS 29-3
Des Moines, WA 98198-9800

Discover Sound Science…at the MaST Center.
Open every Saturday from 10 a.m. to 2 p.m. to the public, the MaST Center, mast.highline.edu, is located at 28203 Redondo Beach Drive S.—halfway between Seattle and Tacoma and about 5 minutes south of the main Highline Campus.

Directions can be found at http://maps.highline.edu/mast.php

Become a fan at www.facebook.com/HighlineMaSTAquarium or

on Instagram @mast_center_aquarium


Seattle Aquarium posting for 2 jobs: Volunteer Engagement Manager & Philanthropy Events Coordinator

Two new positions available with Seattle Aquarium.
VOLUNTEER ENGAGEMENT MANAGER
The Seattle Aquarium is hiring a volunteer engagement manager. The manager defines and implements the vision and goals for adult and youth volunteer programming at the Seattle Aquarium and is ultimately responsible for its development, expansion and evaluation. Current programming includes exhibit interpreters, life sciences/animal husbandry, diving, special events, and administration. The manager also currently oversees the Aquarium’s college internship program and would be a leading voice in the near-term evolution of this program as we explore strategies to make the program more open and accessible to students from all cultures and backgrounds.
For more information and to apply, click here.
Posting expires: Open until filled
PHILANTHROPY EVENTS COORDINATOR
Seattle Aquarium is hiring an events coordinator to join the philanthropy team. The philanthropy events coordinator contributes to the success of the department’s fundraising goal by providing strategic, creative and thoughtful recommendations toward a solid fundraising events program that builds on a donor-centric model. This includes planning and executing donor recognition and cultivation events and assisting the philanthropy events manager with the Aquarium’s major fundraising events. A successful candidate will be able to provide leadership on strategy, new approaches, collaborate with Aquarium colleagues across departments, and steward key donor and volunteer relationships.
For more information and to apply, click here.
Posting expires: Open until filled

Q SCI 497 Special Topics: Agent Based Modelling (winter 2019)

Q SCI 497 is not pre-approved as an elective for Marine Biology, but could either be taken as an extra class, or as part of a Q SCI minor.

Q SCI 497 Special Topics in Quantitative Science: Agent Based Modelling

(4 credits)
Winter 2019
Mondays & Wednesdays, 10:30am – 12:20pm
Instructor: Dr. Andrew Berdahl, berdahl@uw.edu

Agent-based models (aka individual-based models) provide a flexible framework for creating simple representations of complex phenomena in the life, social and physical sciences. In this play-based course we will learn to design, build and perform computational experiments using agent-based models. Along the way you will learn useful programming and data visualization skills


FISH 464: Arctic Marine Vertebrate Ecology

FISH 464 can be applied to elective requirements for both the major and minor in marine biology.

FISH 464 Arctic Marine Vertebrate Ecology (4cr) – TTh 11:30-12:50, Th 1:30-2:50 or 3:00-4:20
Learn how Arctic marine ecosystems are structured and function, explore adaptations and challenges of upper-level Arctic marine predators, and find out how species and populations are affected by changes in the Arctic.
NW, BIOL 180 prerequisite
Instructor: Kristin Laidre (klaidre@uw.edu)

course flyer for FISH 464 winter 2019


Hatchery Operations Coordinator, Sound Salmon Solutions (Edmonds, WA)

JOIN THE SOUND SALMON SOLUTIONS TEAM

HATCHERY OPERATIONS COORDINATOR

Assists with planning and coordinating salmon rearing, facility maintenance, volunteers, and administrative tasks associated educational salmon micro-hatchery operations located in Edmonds WA

This is a part-time hourly seasonal position that runs Dec 1-Jun 30. Variable hours, 10-20 hours/week. See job announcement.

We are taking applications through Friday, November 9, 5PM. Email resumes and letters of interest to jobs@soundsalmonsolutions.org with the subject “Hatchery Operations Coordinator”.

**We DO NOT accept applications through third party social media platforms i.e. Face Book, LinkedIn, etc. **

Please no phone calls or office visits regarding these positions.

Sound Salmon Solutions is an equal opportunity employer and will not discriminate against any employee or applicant on the basis of age, color, disability, gender identity, national origin, race, religion, sexual orientation, veteran status, or any classification protected by federal, state, or local law.


Amanda Gardiner: Marine Biology in Cape Town, South Africa with Cape RADD

Hi everybody! I’m Amanda Gardiner, a junior here at UW pursuing a BS in Biochemistry and Biological Oceanography with minors in Marine Biology and Paleobiology, along with a BA in English – Creative Writing Emphasis. All of these academics mean that my summers are normally filled with classes. This past summer I discovered my new favorite classroom: Cape Town, South Africa!

For the month of July I was a student in the Cape RADD Marine Biology Field Course, where I not only honed my diving skills but learned how to collect data underwater (easier said than done!), learned about the unique environment both above and below the water around South Africa, and how to use programs like R and QGIS to manipulate the data I collected.

I stayed in a flat in a tiny suburb of Cape Town called Glencairn, which was only 5 minutes from the dive shops we used. We had a view of False Bay and on clear days you could see Seal Island (yes Shark Week fans, that Seal Island!). The first few days I was there we got a tour of the Cape Peninsula, and then had several classroom sessions to learn about the geography of the Cape, ocean current interactions between the Indian and Atlantic Oceans, the spreading of kelp into False Bay, and all the commonly found species of fish and invertebrates that we would encounter on the dives.

After our heads were filled with knowledge, it was time for us to dive! Our first dive was a refresher course and practicing some rescue techniques and then we spent the rest of the week practicing our buoyancy and learning how to take data underwater. Turns out quadrats and transects are a lot harder to lay down when you have swells carrying you 20+ feet every few seconds!

Our second week we started adding some variety into the routine. Now that we were comfortable diving and had been on a handful of data collection dives, we started to diversify in how we collected data. We spent a day on the water rather than in it with Yacht Boaz to deploy a BRUV (baited remote underwater video) and do a plastic trawl. After collecting the plastic, we sorted the it and sent it off to 5Gyres to be a part of their database and research into oceanic plastic pollution. I’ve always been an advocate for reducing plastic use, but even I was staggered at just how much microplastic we pulled from what looked like seemingly pristine water when we were sailing.

We continued diving and collecting data, along with starting in on freediving training. Turns out freediving has a lot more to it than just holding your breath! We started off with a technique lecture, and then land training. We stretched, meditated, and practiced several techniques to get used to having that anoxic feeling in our lungs (and missed an African Penguin walking behind us because we were so focused on holding our breath!).

Now it was time to actually use our techniques in the water! We alternated SCUBA diving with freediving depending on the weather and water conditions. On freediving days we would do surface kelp quadrats to track their surface density, which could get so thick at some places you could sit on it and be held out of the water!

We honed our skills for the rest of our time in Cape Town, along with getting crash courses in how to use R and QGIS to analyze the data we collected. Thanks to it being winter down in Cape Town (Southern Hemisphere!), there were several days where we had to do data entry instead of get in the water. We took all the data we had collected on our dives and entered it into the Cape RADD biological diversity database so that it could be used for future research.

Along with our Cape RADD work, we got weekends off to explore Cape Town and we took full advantage of it! In four weekends we managed to squeeze in everything Cape Town could offer, from the aquarium and museums to summiting Table Mountain, ziplining, paragliding off of Lion’s Head, learning to surf, visiting the African Penguins at Boulders Beach, Sandboarding at the Atlantis Dunes, and my personal favorite, cage diving with Great White Sharks off of Seal Island in False Bay.

As much as I loved all the fun things we did while in Cape Town, what I miss most about it is the diving. Anybody who loves water, nature, SCUBA diving, or anything related, this is nirvana for a month.

I had never been diving in kelp forests previously, and now I feel like I want to do nothing else. It was ethereal to see 30+ ft tall stalks of Sea Bamboo listing back and forth in the swell while you get carried soundlessly through the water, hearing only your breathing through the regulator and the crackling in your ears of an ocean filled with life.

Cape RADD
Marine Biology student Amanda Gardiner

Several of our dive sites were frequented by Cape Fur Seals (which are actually sea lions!), and even after a month of seeing them I could never lose the awe I felt when they would soar through the water within touching distance. As much as I feel at home in the water, every time I saw them twist and play through the water I felt incredibly bulky and out of my element, realizing I could never compare to their sleek movements.

Now that I’m back in Seattle and preparing for autumn quarter I can’t help but try and figure out how to get back to Cape Town and glide amongst the kelp again. If you’re a diver or interested in getting certified in SCUBA, if you want to learn how to collect data underwater, if you just want to understand how you can do your part to help the planet, I would look at Cape RADD.

In a month I became confident not only in my diving skills and marine biology knowledge, but I found a sense of place in Cape Town. I feel as comfortable under the water, surrounded by Puffader Shy Sharks and Cape Urchins hiding amongst the Sea Bamboo, as I do walking around the UW Campus. That knowledge fundamentally shifted the way I think about the world and what I want to do with my career for the better, and who can complain about that when it happened by watching Great White Sharks and Seals on the opposite side of the planet?

Students can find out more about Cape RADD field opportunities at www.caperadd.com. This is an independent program, and is not managed by the University of Washington.


SAFS Seminar: Kate Stafford, Scientific serendipity—unveiling the acoustic behavior of bowhead whales

flyer image for Kate Stafford Seminar

Kate Stafford

Senior Principal Oceanographer, Applied Physics Laboratory, University of Washington

Scientific serendipity—unveiling the acoustic behavior of bowhead whales

Scientific discoveries are often the result of serendipity—finding something completely unexpected
that leads to more questions than answers. A chance recording of bowhead whales in Disko Bay in Greenland, and data obtained from piggy-backing a hydrophone on an oceanographic mooring in Fram Strait, revealed unexpected information about bowhead whale singing behavior. Curiously, many tens of distinct songs are sung by a population in a single season. It is unknown why there is such a high diversity and turnover in bowhead whale songs, but the environment in which they have evolved may be driving this novelty.

Dr Kate Stafford is a principal oceanographer at the Applied Physics Lab and affiliate associate professor in the School of Oceanography. Kate has BAs in French Literature and Biology from the University of California at Santa Cruz and degrees in Wildlife Science (MS) and Oceanography (PhD) from Oregon State University. Before going to graduate school, she lived as a Fulbright scholar for a year in Paris, studying Medieval French Literature. Kate’s research focuses on using passive acoustic monitoring to examine migratory movements, geographic variation and physical drivers of marine mammals, particularly large whales. She has worked all over the world, from the tropics to the poles, and is fortunate enough to have seen (and recorded) blue whales in every ocean in which they occur. Kate’s current research focuses on the changing acoustic environment of the Arctic and how changes, from sea ice declines to increasing industrial human use, may be influencing subarctic and Arctic marine mammals.

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